1. Scientific section
- Institute of Experimental Physics SAS
- Astronomical Institute SAS
- Centre for advanced materials application SAS (CEMEA)
- Mathematical Institute SAS
- Institute of Geotechnics SAS
- Institute of Materials and Machine Mechanics SAS
- Institute of Hydrology SAS
- Institute of Physics SAS
- Institute of Electrical Engineering SAS
- Institute of Geography SAS
- Institute of Construction and Architecture SAS
2. Scientific section
- Biomedical Research Center SAS
- Institute of Forest Ecology SAS
- Institute of Inorganic Chemistry SAS
- Institute of Parasitology SAS
- Institute of Chemistry SAS
- Institute of Neuroimmunology SAS
- Polymer Institute SAS
- Centre of Experimental Medicine SAS
- Centre of Biosciences SAS
- Plant Science and Biodiversity Center SAS
3. Scientific section
- Centre of Social and Psychological Sciences SAS
- Institute of Economic Research SAS
- Institute of Philosophy SAS
- Ludovit Stur Institute of Linguistics SAS
- Jan Stanislav Institute of Slavistics SAS
- Institute of State and Law SAS
- Institute of Oriental Studies of the SAS
- Institute of Musicology SAS
- Institute for Sociology SAS
- Institute of Ethnology and Social Anthropology SAS
- Institute for Research in Social Communication SAS
- Institute of Slovak Literature SAS